Multiplexed RNA Fusion Panels

Anchor Molecular offers a comprehensive collection of over 50 commonly observed RNA fusions, organized into eight multiplexed panels optimized for PCR- and NGS-based detection workflows. Each panel contains fusion RNAs at equal copy numbers, ensuring consistent and reliable performance across targets. Designed as a single, consistent, and flexible control source, Anchor Molecular’s Multiplexed RNA Fusion Panels help molecular labs, kit developers, and oncology researchers save time, reduce costs, and streamline regulatory validation.

  • Panels 6 and 7 include fusions frequently associated with hematologic cancers.
  • Panels 1, 2, 3, 4, 5, and 8 feature five to seven multiplexed fusions commonly found in solid tumors.
  • For broader applications, the Multiplexed RNA Fusion Mix v2 combines all solid tumor fusions into a single, convenient panel.

All panels are available as purified RNA in buffer or in FFPE format, supporting a wide range of research and diagnostic applications. For detailed information of each RNA fusion in each panel, here is the link.

We also offer individual RNA fusion controls and BCR-ABL1 panels, available under separate product categories.

For a free sample or to inquire about custom RNA fusions in human plasma or other formats, please contact us at info@anchormolecular.com  or +1 925-400-9986 for quote.

Now go add some variable products!

Purified RNA fusion Panel (each member has background cellular RNA)

Stock Cat No. Product Name Amount in 25ul/vial PriceQuantity
In Stock RF162-001 Fusion Panel 1 >500 copy/ul with 20ng/ul cellular RNA, 25ul/vial Login for Price
In Stock RF162-002 Fusion Panel 2 >500 copy/ul with 20ng/ul cellular RNA, 25ul/vial Login for Price
In Stock RF162-003 Fusion Panel 3 >500 copy/ul with 20ng/ul cellular RNA, 25ul/vial Login for Price
In Stock RF162-004 Fusion Panel 4 >500 copy/ul with 20ng/ul cellular RNA, 25ul/vial Login for Price
In Stock RF162-005 Fusion Panel 5 >500 copy/ul with 20ng/ul cellular RNA, 25ul/vial Login for Price
In Stock RF162-006 Fusion Panel 6 >500 copy/ul with 20ng/ul cellular RNA, 25ul/vial Login for Price
In Stock RF162-007 Fusion Panel 7 >500 copy/ul with 20ng/ul cellular RNA, 25ul/vial Login for Price
In Stock RF162-008 Fusion Panel 8 >500 copy/ul with 20ng/ul cellular RNA, 25ul/vial Login for Price
In Stock RF160-001 Cellular RNA Only Same amount cellular RNA as above Login for Price
In Stock RF162-100 Multiplexed RNA Fusion Mix v2 (Combo of Panel 1, 2, 3, 4, 5, 6, 7, 8) >500 copy/ul with 20ng/ul cellular RNA, 25ul/vial Login for Price


RNA fusion panels in FFPE

Stock Catalog No. Product Name Base Matrix PriceQuantity
In Stock RF161-001 Fusion Panel 1 FFPE Login for Price
In Stock RF161-002 Fusion Panel 2 FFPE Login for Price
In Stock RF161-003 Fusion Panel 3 FFPE Login for Price
In Stock RF161-004 Fusion Panel 4 FFPE Login for Price
In Stock RF161-005 Fusion Panel 5 FFPE Login for Price
In Stock RF161-008 Fusion Panel 8 FFPE Login for Price
In Stock RF161-099 Multiplexed RNA Fusion Mix FFPE (Combo of Panel 1, 2, 3, 4, 5, 8) FFPE Login for Price


RNA Fusions Listed by Panel

Below is a detailed list of fusion targets grouped by panel. Panels 1–5 and 8 focus on fusions commonly found in solid tumors, while Panels 6 and 7 contain fusions associated with hematologic malignancies. Panels 6 and 7 share the same fusion names but differ in genomic coordinates, and are distinguished by internal version numbers.

Note: * indicates version number assigned by Anchor’s internal naming system.

Panel 1-Tissue Panel 2-Tissue Panel 3-Tissue Panel 4-Tissue Panel 5-Tissue Panel 6-Heme Panel 7-Heme Panel 8-Tissue
ELM4-ALK v1 TPM3-NTRK1 ELM4-ALK v2 ELM4-ALK v3 NPM1-ALK FIP1L1-PDGFRA v1* FIP1L1-PDGFRA  v2* FGFR3-TACC3 v1
ETV6-NTRK3 FGFR3-TACC3 v3 FGFR2-AHCYL1 FGFR2-BICC1 TFG-NTRK1 RUNX1-RUNX1T1 v1* RUNX1-RUNX1T1  v2* FGFR3-TACC3 v3
CD74-ROS1 SLC34A2-ROS1 PPFIBP1-ROS1 EZR-ROS1 SLC45A3-BRAF TCF3-PBX1 v1* TCF3-PBX1  v2* FGFR3-BAIAP2L1
KIF5B-RET CCDC6-RET PRKAR1A-RET NCOA4-RET EWSR1-ATF1 KAT6A-CREBBP v1* KAT6A-CREBBP  v2* FGFR2-BICC1
SS18-SSX1 TMPRSS2-ERG SS18-SSX2 PRCC-TFE3 EGFR-SEPT14 ETV6-ABL1 v1* ETV6-ABL1  v2* FGFR2-CASP7
COL1A1-PDGFB PAX8-PPARG1 TMPRSS2-ETV1 MET Ext14 skipping EGFR variant III PCM1-JAK2 v1* PCM1-JAK2  v2*
LMNA-NTRK1 FGFR2-PPHLN1 SLC45A3-ERG EWSR1-FLI1 QKI-NTRK2

Note: *  means version number assigned by Anchor’s internal naming system

ID 5’ Gene Breakpoint (GRCh37/Hg19) 3’ Gene Breakpoint (GRCh37/Hg19)
Panel1
EML4-ALK v1 chr2:42522656 chr2:29446394
ETV6-NTRK3 chr12:12022903 chr15:88483984
CD74-ROS1 chr5:149784243 chr6:117645578
KIF5B-RET chr10:32311776 chr10:43612032
SS18-SSX1 chr18:23612363 chrX:48123217 (chrX_jh806590_fix:503211)
COL1A1-PDGFB chr17:48268178 chr22:39631879
LMNA-NTRK1 chr1:156100564 chr1:156844363
Panel2
TPM3-NTRK1 chr1:154142876 chr1:156844363
FGFR3-TACC3 v3 chr4:1808661 chr4:1739325
SLC34A2-ROS1 chr4:25665952 chr6:117650609
CCDC6-RET chr10:61665880 chr10:43612032
TMPRSS2-ERG chr21:42870046 chr21:39817544
PAX8-PPARG chr2:113984732 chr3:12421203
FGFR2-PPHLN1 chr10:123243212  chr12:42745687
Panel3
EML4-ALK v2 chr2:42552694 chr2:29446394
FGFR2-AHCYL1 chr10:123243212 chr1:110551656
PPFIBP1-ROS1 chr12:27809663 chr6:117642557
PRKAR1A-RET chr17:66522053 chr10:43612032
SS18-SSX2 chr18:23612363 chrX:52786931 (chrX_jh806587_fix:2470969)
TMPRSS2-ETV1 chr21:42870046 chr7:14017105
SLC45A3-ERG chr1:205649522 chr21:39817544
Panel4
EML4-ALK v3 chr2:42491871 chr2:29446394
FGFR2-BICC chr10:123243212 chr10:60461834
EZR1-ROS1 chr6:159191796 chr6:117645578
NCOA4-RET chr10:51582939 (chr10_jh591181_fix:283998) chr10:43612032
PRCC-TFE3 chr1:156738031 chrX:48895967 (chrX_jh806590_fix:1277871)
MET ex14 Skipping chr7:116411708 chr7:116414935
EWSR1-FLI1 chr22:29683123 chr11:128651853
Panel5
NPM1-ALK chr5:170818803 chr2: 29446394
TFG-NTRK1 chr3:100451516 chr1:156844363
SLC45A3-BRAF chr1:205649522 chr7:140494267
EWSR1-ATF1 chr22:29684775 chr12:51203239
EGFR-SEPT14 chr7:55268106 chr7:55863785
EGFR Variant III chr7:55087058 chr7:55223523
QKI-NTRK2 Chr6:163984751 chr9:87482158 (chr10_jh591183_fix:122632)
Panel6
FIP1L1-PDGFRA chr4: 54280889 chr4:55141052
RUNX1-RUNX1T1 chr21:36231771 chr8:93029591
TCF3-PBX1 chr19:1619110 chr1:164761731
KAT6A-CREBBP chr8:41794774 chr16:3901010
ETV6-ABL1 chr12:12006495 chr9:133729451
PCM1-JAK2 chr8:17830196 chr9:5069925
Panel7
FIP1L1-PDGFRA chr4:54292132 chr4:55141089
RUNX1-RUNX1T1 chr21:36252854 chr8:93029593
TCF3-PBX1 chr19:1615684 chr1:164761730
KAT6A-CREBBP chr8:41786996 chr16:3860780
ETV6-ABL1 chr12:12022903 chr9:133729451
PCM1-JAK2 chr8:17882962 chr9:5064882
Panel8
FGFR3-TACC3 v1 chr4:1808661 chr4:1741429
FGFR3-TACC3 v3 chr4:1808661 chr4:1739325
FGFR3-BAIAP2L1 chr4:1808661 chr7:97991744
FGFR2-BICC1 chr10:123243212 chr10:60461834
FGFR2-CASP7 chr10:123243212 chr10:115457253

RNA Fusions Listed by Cancer Type

Cancer Type Associated Fusions Offered by Anchor Molecular
Non-Small Cell Lung Cancer (NSCLC) EML4-ALK (v1,2,3)  CD74-ROS1  EZR-ROS1  PPFIBP1-ROS1  SLC34A2-ROS1  SDC4-ROS1
 MET Exon 14 skipping  TPM3-NTRK1  TFG-NTRK1  LMNA-NTRK1  BCR-NTRK2  QKI-NTRK2
 KIF5B-RET  CCDC6-RET  NCOA4-RET  EGFR-SEPT14  EGFR variant III  NPM1-ALK
Thyroid Cancer CCDC6-RET  NCOA4-RET  PAX8-PPARG1  ETV6-NTRK3  PRCC-TFE3  PRKAR1A-RET
Soft Tissue Sarcomas SS18-SSX1  SS18-SSX2  COL1A1-PDGFB  EWSR1-ATF1  EWSR1-FLI1
Breast Cancer ETV6-NTRK3  BCR-NTRK2
Prostate Cancer TMPRSS2-ERG  TMPRSS2-ETV1  SLC45A3-ERG  SLC45A3-BRAF
Melanoma EWSR1-ATF1
Infantile Fibrosarcoma ETV6-NTRK3  BCR-NTRK2  QKI-NTRK2
Cholangiocarcinoma FGFR2-BICC1  FGFR2-PPHLN1  FGFR2-AHCYL1 FGFR2-CASP7
Hematologic Malignancies BCR-ABL1  ETV6-ABL1  RUNX1-RUNX1T1  KAT6A-CREBBP  FIP1L1-PDGFRA
 TCF3-PBX1  NPM1-ALK  PCM1-JAK2
Other Solid Tumors FGFR3-TACC3  PRKAR1A-RET  ETV6-NTRK3  TPM3-NTRK1  TFG-NTRK1  LMNA-NTRK1

 

Documents

Sample Certification (COA)

(The COA for your order will be enclosed within the shipping package.)
Lot # Certificate Type Catalog Number(s)
301051 Certificate of Analysis RF162-001
301052 Certificate of Analysis RF162-002
301053 Certificate of Analysis RF162-003
301054 Certificate of Analysis RF162-004
301055 Certificate of Analysis RF162-005
301068 Certificate of Analysis RF162-008
301059 Certificate of Analysis Of Multiplexed RNA Fusion Mix v2 RF162-099

 

Lot # Certificate Type Catalog Number(s)
301038 Certificate of Analysis RF160-001

Safety Data Sheets

Safety Data SheetSDS RNA Fusion Panels

Product Insert

PI-AM RNA Fusion FFPE Panels
PI-AM Purified RNA Fusion Panels

RNA Fusion Brochure